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The Maxent models are effective in predicting potential terrace distributions and reveal systematic differences between ancient and modern terrace arrays in the study area.
Our study highlights potential benefits from using high-resolution arrays in the study of cancer.
Expression values were generally consistent across rats and arrays in the study.
These provided a meaningful way to identify arrays with divergent probe intensity distributions relative to other arrays in the study.
The R package software of Affymetrix Microarray Suite 5.0 was used to generate signal intensities for each of the HG-U133 Plus 2.0 arrays in the study.
The third normalization step is applied to each gene across all the arrays in the study ("normalize to median"): The median of all the values obtained for a given gene is calculated and used as the normalization standard for that gene, so that, regardless of absolute differences in the expression of the various genes, they are placed on the same scale for comparison.
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Although the EDSM is informed by both permissive and non-permissive effects, the limited dataset afforded by the addressable arrays in this study limits the utility of the resulting matrices for extrapolating information on non-permissive residues.
The false positive rate was calculated based on the 8 sex-mismatched arrays in this study: the length of chromosome × (from all the 8 hybs).
The 192 physiological peptides represented on the arrays in this study do not conform to a random distribution of residues at each position.
All the CNT arrays in this study have very high densities, and the field-screening effects become the dominant disadvantageous factor to the electron emission.
This resulted in 40 arrays remaining in the study (see Additional File 9).
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