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l, m Nanopillar arrays generated using a silicon substrate (l) or a glass substrate (m).
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(73) The two-dimensional (2D) projection map of the dodecamer array was generated using the EMAN software as described elsewhere.
A summary of the image signal data for every gene interrogated on the array was generated using the Affymetrix MAS 5.0 (GCOS v1.3) statistical algorithm.
Second, we overlaid and filtered all miR targets with the white-crowned sparrow mRNA array data generated using the same samples with the IPA predicted targets.
These authors suggested that this is reflective of the cell population sampled rather than amplification bias since this effect was not observed in the array data generated using linearly amplified bulk tumor RNA.
Genes shown to have increased copy number in gastric cancer were also found to be overexpressed in samples obtained by macrodissection (LS P value < 10-5), but not in array data generated using microdissection.
A set of hundred random peptides from the 1176 array design were generated using Microsoft Excel.
Statistical analysis and gene lists for the array experiments were generated using the GeneSpring software package (Agilent Technologies).
(A) PP/PN fold-change comparison (PP/PN) between GSE51440 (HT HG-U133+ PM array plates) and datasets generated using Affymetrix Human Genome U133 Plus 2.0 arrays.
These age-associated interactome modules, derived with Illumina 27K arrays, have also been validated in data generated using Illumina 450K arrays (Fig. 1B and C).
The array expression values were generated using Affymetrix Microarray Suite 5.0 and dChip analyzer 1.3.
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