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The array used is the Affymetrix Drosophila 2.0 array that was designed using version 3 of the D. melanogaster reference (www.flybase.org).org

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The cancer tissue array used was ones of AccuMax array (Petagen Inc, Seoul, Korea).

The description of the study design and the different arrays used is given in Figure 1 and Table 1.

Most IS tested by the macro-array used are from the putative/hypothetical plasticity zone (PZ1 : HP0428 to HP0460, and PZ2: HP0982 to HP1078) of the genome 26695.

The Affymetrix arrays used were the 500 k and 6.0.

The cDNA arrays used were chosen from a soybean root cDNA library [ 48] and a subtractive hybridization experiment [ 9].

The arrays used were 4X72K format containing 72,000 60mer probes targeting each of the four individual samples hybridized and analyzed simultaneously on each array.

The array we used is specific to the DMD region of the X chromosome.

Because the number of deletions varies strongly with the array used, these were analysed separately.

LC-miRHumanMouseRat-9.1-070207-MRA-1030 array was used which was deposited in MIAMExpress.

The same RNA samples that were used for array hybridization were used for cDNA synthesis.

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