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Data from both array platforms was therefore integrated in our analyses.
Most studies used the Affymetrix U95, the U133A/B and the U133 Plus 2.0 Array Platforms.
This prognostic significance was observed in multiple other cohorts that utilized different array platforms (Figure S6).
We developed a method for comparing data from the different array platforms.
The analysis was thus based upon 38.CEL files representing 22 different cell preparations and three different array platforms.
Data were cross-validated between array platforms using GSEA and the method of Cheadle et al (2006) [32].
528 genes (4.02% of all targets represented on multiple array platforms) were differentially expressed across all variants tested (Table S3).
Microarray data were obtained from the 12 tumors using Affymetrics HG-U133A array platforms as described previously [20].
In addition, different methods often deal with data from different tiling array platforms and/or for specific applications.
HRG-induced gene expression data obtained from various array platforms including the tiling array data was then investigated.
Second, the array platforms for the two species have different resolutions with much higher resolution for the bovine data sets.
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