Focus steering capabilities of the array were analysed using an open-source T-Array software developed at Moscow State University.
SNP genotyping data obtained from the array were analysed using Genome Studio V2010.1 (Illumina Inc .. SNPs were called using genotyping module integrated in the software where individual SNP is viewed as GenoPlots.
Each array was analysed separately.
Raw data from each array were analysed using TwoClassDif.
The XDR Hi and XDR Lo images generated per array were analysed together and the data extracted.
The array was analysed with the Agilent scanner and the Feature Extraction software (v9.1).
A total of 49 microarrays, with RNA from one fish per array, were analysed across two treatment groups and five time points.
Thus, when data from the human HG-U133A GeneChip array was analysed using a probe-mask file based on RNA hybridisation intensity, the number of probe-sets called 'present' by the MAS 5.0 algorithm increased 1.5-fold [ 6].
To investigate the mechanism governing hPSC attachment to the arrayed materials, arrays were analysed by ToF-SIMS after conditioning with culture medium for 1 hour to mirror the protocol used prior to the hPSC adhesion assay.
Membrane arrays were analysed using ImageJ.
