Sentence examples for array intensity from inspiring English sources
The ESR1 array intensity showed a significant Spearman rank correlation with the ERα IHC percentage (r = 0.71, p-value <0.01), the PGR array intensity also showed a significant correlation with the PgR IHC percentage (r = 0.89, p-value <0.01).
Second, the intensities for each experiment were corrected for the variation in total array intensity by dividing the intensities with its corresponding total array intensity separately for Bacteria and Archea.
It takes normalized array intensity values, rank genes according to score (e.g., signal-to-noise) between phenotype groups.
The Global background compensation is a simple method to minimize the array-wise background level by subtracting the array PM intensity minimum from all PM values, i.e. resetting each array intensity distribution to start at zero prior to normalization.
In this study, CNV calls derived from Illumina HumanHap 300 v.1.0 SNP array intensity data from an initial sample size of 730 ALS cases and 789 controls were analysed for association with ALS.
Array intensities and calls were collected using R, and quantile normalization was used on one time present calls.
For MeDIP analysis, array intensities are represented as log2 signal ratios of immunoprecipitated DNA to input DNA.
Intensities were normalized using average factors scaled to the median array intensities over the entire array by using the median array as a reference.
The raw array intensities (CEL files) were normalized using robust multichip average (RMA) and filtered using Significance Analysis of Microarrays (SAM) with a false discovery rate of 5%.
The limma [26] and affy [32] packages within the R environment [33] were used to pre-process the array intensities and identify differentially expressed (DE) genes.
