The phrase "array across all" is not standard in written English and may cause confusion.
It could be used in contexts discussing distribution or organization of items or data across various categories or locations.
Example: "The data was arrayed across all departments to ensure comprehensive analysis."
Alternatives: "spread across all" or "distributed among all".
SNP genotypes were called using the Affymetrix BRLMM algorithm [12], and the mean SNP array call rate for the combined 500 k array across all individuals was 98.5%.
We calculate the MAD score of the CpG methylation levels for each probe on the array across all individuals of the same age group, that is, children.
This normalization takes each column in an experiment independently and computes the percentile of expression values for this array, across all spots (where n has a range from 0too 100 and n = 75 is the median).
To detect candidate DMRs and VMRs, we first assign each CpG probe a differential statistic measuring the strength of association with age (regression beta value or t-statistic) or median absolute deviation (MAD) score of the CpG methylation levels for each probe on the array across all individuals of the same age group.
Array signal across all promoters on the array was determined using Repitools [ 55, 66, 67].
To perform the meta-analysis for the pig global immune response, we used 30504 array elements across all datasets, which were aligned to custom cDNA assemblies [ 38] to match elements across arrays.
In an effort to present a dataset with minimal false positives, we chose an empirical cutoff based on the array average across all peptide spots to classify interactions.
For array CGH, across all 16 samples, we observed 9 samples with more duplication and 7 samples with more deletions, a rather ideal scenario).
The filtered data from the IPLab program were then uploaded into R version 2.6.1 software package to perform array normalization across all of the samples based upon quantile-quantile (Q-Q) plots, using a procedure known as quantile normalization [ 42].
Following the methodological copy number pipeline, 37 CNVRs were identified by array CGH across all the four chromosomes queried (Figure 2) with the proportion of any given chromosome amenable to CNVR varying from 0.03% to 0.31%.
For the comparison between Odumasy females and males where expression ratios were estimated indirectly by using the information from all experiments the within arrays normalisation was repeated across all arrays included in the analysis.
