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The alignment files were subjected to local realignment and de-duplication using the Genome Analysis Toolkit (GATK) [ 36] and Picard [ 37].
For each participant, functional images were subjected to spatial realignment to the mean image, slice time correction to the middle slice, reorientation, normalization to a standard EPI template based on the Montreal Neurological Institute (MNI) reference brain, and smoothing with an isotropic 8 mm full-width half-maximum Gaussian kernel.
Motion parameters calculated during the realignment stage of preprocessing were subjected to statistical analysis to establish whether volunteers moved more during sedation.
After recalibration and local realignment using the Genome Analysis Toolkit (GATK version 1.0.5974) [ 15], the refined sequencing results were subjected to variant calling using a toolkit (Atlas2) [ 16].
Jackson's unrealistic position is to demand that realignment be repealed.
EPI volumes were realigned to the first volume for each subject to correct for interscan movement, and unwarped for static magnetic field inhomogeneities using field maps [37] and for movement-induced inhomogeneities using realignment parameters [38].
The agenda of that meeting was amended to include conference realignment.
Any new French president is bound to cause some realignment in Europe.
A majority in each league is needed to approve a realignment plan.
GATK v4.0.4.079 was used to perform indel realignment within the PALEOMIX v1.2.13.1 pipeline74.
The messages amplified through persistent campaigns should be conducive to the eventual realignment of allies.
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