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There is still some disagreement concerning whether consonantal places of articulation are specified appropriately by binary oppositions of this kind.
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Such processes are sufficient for modelling a significant class of stochastic systems, however there are interesting systems which cannot be specified appropriately in such a framework.
Parameters seqfile, outfile, and treefile were specified appropriately, and other parameters were set as follows: verbose = 1, seqtype = 1, CodonFreq = 2, aaDist = 0, model = 0, NSsites = 3, ncatG = 3, icode = 0, RateAncestor = 1, clock = 0, cleandata = 0, method = 0 (with all additional parameters being set to the codeml default settings, as described in the 2009 PAML version 4.3 user guide.
We also provide an efficient algorithm for calculating the coefficients in the spherical harmonic expansions of functions that are specified by their values at these appropriately chosen points (a procedure known as the forward spherical harmonic transform).
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Main effects and interactions between conditions were specified by appropriately weighted linear contrasts, and determined using the t-statistic on a voxel-by-voxel basis.
The data set is reported in detail in the Additional file 2. Following [ 39] we used lognormal calibration densities with zero means whose 5%and95%5% quantiles were specified by appropriately chosen standard deviations and offsets and corresponded to the fossil derived minimum and maximum ages.
Nevertheless, the representation matrix A, for example, can be specified uniquely by appropriately selecting the basis sets such that and as well as and are isomorphic also as Euclidean spaces.
No stipend was specified.
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