While CRs recognize both avirulent and virulent strains of Mtb, MRs are reported to recognize only virulent strains [ 70], indicating that this path of entry is particularly useful for pathogenesis of virulent Mtb.
Several groups have developed 'anti-oligomer' or 'anti-amyloid' antibodies that are reported to recognize oligomers but not fibrils [ 43- 46].
Similarly, two land plant SBP-box genes, PpSBP2 and AtSPL7, are reported to recognize a GTAC motif of CuREs and regulate nutritional copper signals [ 8, 9].
As many GntR regulators are reported to recognize palindromes and also exhibit nucleotide recognition preferences among the same subfamily [ 5], we utilised these clues to scan the upstream sequences.
There are reported antibodies that recognize hnRNP A2/B1 [ 10] or hnRNP B1 respectively [ 41].
Some antibodies were generated and are in part commercially available which are reported to solely recognize misfolded SOD1.
All frequencies are reported from nonredundant sequence as recognized by phrap within the pipeline.
Although TLR2 has been reported to recognize fungal polysaccharides [ 22, 36], it is not responsible for recognizing PS-F2 since BMDMs derived from wild-type and TLR2−/− mice responded equally well to PS-F2 stimulation (see Additional file 2).
Certain antibodies have been reported to recognize conformational epitopes in Aβ assemblies and react with similar assemblies of other amyloidogenic proteins [12] [15], and some raised against oligomers recognize both oligomeric and fibrillar assemblies [15] [17].
YTH M6A RNA binding protein 2 (YTHDF2) is reported to recognize and decay m6A-modified mRNA11.
