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The stringency settings for adoption of secondary structures in different alignment steps was relaxed (0.51), as we wanted to retain as much structure information as possible (see [ 30] for a detailed description of the RNA SALSA method).
Since knee alignment have great impact on biomechanical force transmission which may influence the degree of extrusion, a larger sample allowing enough numbers in different alignment categories would be valuable in future work [ 34].
# Through entire manuscript the Authors state, that there is "change in amino acids R- > K", but those residues are marked on sequence alignment to be in different places.
A notable difference among solved sHSP ACD structures is that dimers appear in different alignments of the two β6+7 strands (Clark et al., 2011; Hochberg et al., 2014).
Identifying ab initio conserved regions in different alignments and combining them in a single consensus alignment is more complicated.
Nucleotide positions in the 10-5 map did not correspond to the positions in the QTL-BASE2 and BC1 maps because the SNPs were discovered in different populations and were based on different alignments.
The SVM model was trained with different alignments in the positive and negative training sets, which results in an asymmetric model.
Meanwhile, the odd-even effect in the rectification ratios is attributed to different alignments between frontier molecular orbitals and Fermi energy of electrodes for odd- and even-numbered ferrocenyl-n-alkanethiolates, which is originated from the odd-even dependent coupling strength between the ferrocenyl head group and the adjacent electrode.
Thirdly, the acting forces and moments in the knee may be changed with different alignments of the prosthesis.
Attention and intention are in perfect alignment.
Stewart Goodyear and the Czech National Symphony are in perfect alignment.
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