Sentence examples for are from the modEncode from inspiring English sources

Data are from the modEncode database.

More specifically, 42 ChIP-chip and 42 ChIP-seq datasets were from the modENCODE project [ 42, 46], 38 Chip-chip datasets were from the Berkeley Drosophila Transcription Network Project (BDTNP) [ 53], and 46 ChIP-chip datasets were from literature.

9,126 RNA polymerase II binding regions reported by ChIP-sequencing were adopted from the modENCODE project [ 8] and 3,729 RNA polymerase II pausing regions were collected from the work of Mavrich et al. [ 37].

Coordinates for the 9 predicted chromatin states were obtained from the Modencode progect [ 4].

The normalized RNA-seq data was obtained from the modENCODE project [ 68, 69].

Normalized RNA-seq data were downloaded from the modEncode website (http://www.modencode.org).org

All can be reached from the modENCODE project portal at http://www.modencode.org.org

Temporal expression patterns of the ppk gene family were extracted from the modENCODE RNA-sequencing database (Celniker et al. 2009; Graveley et al. 2011).

The ChIP-chip binding intensity for the JIL-1 protein and the nine chromatin states defined in Kharchenko et al. (2011) were downloaded from the modENCODE project database (BG3 D. melanogaster cell line).

Paired-end RNA-seq reads from D. melanogaster whole male, whole female, carcass (mixed males and females), male head, female head, testis, accessory gland, and ovary tissues were downloaded from the modENCODE site at http://www.modencode.org/.org/

Analysis algorithms may evolve; readers are referred to the modENCODE site for the latest version of the processed expression data.