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Archived sequence from an arthropod (the milkweed bug, Oncopeltus fasciatus: [SRR:057573]), a plant (Silene vulgaris: [SRR:245489]), and a mammal (the ground squirrel Ictidomys tridecemlineatus: [SRR 352220]) were selected to test the performance of the pipeline across taxa and genome sizes.
With reduced costs have come increases in the volume of archived sequence data and concomitant efforts to develop scalable data models that provide fast, flexible access.
UniProt consists of several classifications: Swiss-Prot and TrEMBL contain sequence and functional information about proteins, UniRef and UniParc contain sequence and archived sequence records and, when available, supporting data such as literature references and cross-referenced databases.
To this end, early bioinformatic approaches applied to publically archived sequence data provided glimpses of the RNA editome, revealing the distribution and structural characteristics of RNA editing events [ 13, 17- 19].
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Of all archived sequences, 79%% of sequences that underwent genotyping validation were of the pure B subtype, and all non-recombinant sequences were confirmed as having been correctly reported in the literature.
We archived our sequence alignments and maximum-likelihood and Bayesian tree results in TreeBASE (Submission 14718; http://purl.org/phylo/treebase/phylows/study/TB2 S14718).
The heterogeneous formats of genome sequences archived in different sequencing centers hampered the integration of the data for efficient and comprehensive comparative analyses.
Contrast this with the archive sequence in which we see him use ferociously homophobic language against a white journalist not long after his release from prison.
Several years earlier she had finished her vast Canopus in Argos: Archive sequence of SF novels; a few years later she embarked on her final surveys of the searing future.
He enjoyed spotting familiar objects - our fridge, our trampoline, and, in a brief archive sequence, his toy owl (now a shadow of its former self), in all its original glory of white fluff and smart leather claws.
Our study also provides one of the first demonstrations of the utility of trace archive sequence data in evolutionary analysis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com