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The simulator offers a choice of either deterministic numerical approximation with standard solvers or execution with a stochastic simulation algorithm (SSA) (Gillespie, 2007).
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Using pairwise approximation with a standard closure, a number of important characteristics of disease dynamics are derived analytically, including the final size of an epidemic and a threshold for epidemic outbreaks, and it is shown how these quantities depend on disease characteristics, as well as the number of disease stages.
A 95% confidence interval (CI) and two-sided P-value for testing the null hypothesis of no difference between treatment groups was performed based on the normal approximation (Z-test) with standard errors calculated by the bootstrap method.
The good performance of the score based on the optimal alignment is especially attractive as this shortest-path approximation can be computed with standard global alignment implementations, such as the Stretcher program from the EMBOSS package followed by projection to the next pd matrix.
We demonstrate that, with standard approximations, protein variance relative to its mean should be independent of repressor strength in a physiological range.
An alternative approach is an inclusion of the dispersion correction to the total energy obtained with standard DFT approximation explicitly by hand with, e.g., DFT-D method, that is atom pair-wise sum over C6R-6 potentialseese.g.e.g., Ref. [14]).
More recently, other forms of frame approximation have been introduced and of particular interest is one in which 'boundary approximations' are used within an element with standard displacements specified on a frame.
The resulting system is solved together with standard finite element approximations of the Navier Stokes equations and of the bulk parabolic PDE for the surfactant concentration.
Effect estimates from included reviews were extracted as point estimates and 95% confidence intervals, with standard errors back-computed according to normal approximation.
Statistical significance of coexpression was assessed based on the approximation that Fisher's z-transformed correlation coefficients are normally distributed with standard error of (N-3)−1/2 [30].
The standard chi-square approximation with 16 df yields the p-value of 0.069 for the test for homogeneity.
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