In this work, we present Ragout (Reference-Assisted Genome Ordering UTility), a genome rearrangement approach for reference-assisted assembly that can produce high-quality scaffolds with a small number of misordered contigs and high genome coverage.
The species distributions in all these samples are described in Supplementary File 1, and the results from these experiments are presented in Supplementary File 2. Short k-mer profiles have previously been used as an alternative approach for reference-independent comparative metagenomics, where a length of k = 2 was shown to yield the best separation (Willner et al., 2009).
Operating data of a typical month are used in order to test the approach for the reference system.
The standard approach for computing reference crop evapotranspiration (ETo) is the FAO-56 Penman-Monteith (FAO-PM) method, which requires data on air temperature, radiation, air humidity and wind speed.
By far, the most common approach for estimating reference conditions is to quantify them at a set of sites relatively unexposed by human activity.
We aimed to develop novel methods to determine the presence or divergence of genes in a Staphylococcus aureus multistrain PCR product microarray-based CGH approach for which reference DNA was not available for some probes.
The bioinformatics screening we employed tried to eliminate duplicates being used for the SNP assay design but the nature of the 3′ data and inherent complications of de novo assembly approach for the reference likely limited its effectiveness.
The framework we have proposed can serve as a general approach for using reference data in current and future imputation studies, and we expect that it will spur additional methods development in this area.
He said about 400 of them had approached him for reference letters so they could get work abroad.
In recent years, noniterative Correlation-based Tuning (CbT) and Virtual Reference Feedback Tuning (VRFT) have been proposed as an alternative to the standard model-based approach for model-reference control design.
In recent years, direct data-driven controller tuning methods have been proposed as an alternative to the standard model-based approach for model-reference control design.
