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We explored array-based single feature polymorphism (SFP) discovery as a high-throughput approach for marker development in cultivated tomato.
Metabolite-based clustering is an unsupervised approach for marker identification based on grouping similar concentration profiles of putative metabolites.
Our approach for marker enrichment and candidate gene identification in a target region can be extended to any other species with or without reference genome.
Therefore, whole genome sequencing and re-sequencing provides a cost-effective approach for marker discovery and development for plant breeding programs.
We demonstrated the feasibility of the BSTA approach for marker enrichment and fine-mapping of specific genomic regions in a non-model organism.
The study shows that the markers can be transferred from Populus to Salix in approximately half of the cases and justifies this approach for marker application and development in Salix.
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Genetic mapping is a commonly-used approach for marker-trait association discovery in plant molecular studies.
Genomic selection or genome-wide selection (GS) has been highlighted as a new approach for marker-assisted selection (MAS) in recent years.
Mapping was performed using only the bin-mapping approach for markers having "presence" allele calls in at least 10 individuals in the SynOp progeny.
Our goal is to characterise several members of a gene family proposed to play a role in controlling lignin synthesis and wood properties in conifer trees, in order to support candidate gene approaches for marker discovery.
The approach used for marker enrichment in non-model organisms generally depends on the availability of genomic information.
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