Sentence examples similar to applying sequence alignment in from inspiring English sources

The residues to which the distance constraints were applied, were shifted according to the sequence alignment in Chang et al. (1998).

SeqCentral offers highly-scalable genetic sequence alignment in the cloud.

FASTA is used for sequence alignment in 3dRPC.

The ClustalW algorithm [31] and the Homology module of InsightII (version 2000 Accelrys San Diego CA) were applied in sequence alignment, and the best-fit alignment was obtained based on the Blosum scoring matrix [32] and previous alignments [16].

Therefore we first apply the sequence alignment algorithm to predict AMPs.

Although we have focused on DNA sequence alignments in this study, the approach we describe can also be applied to amino acid alignments.

Further complicating cross-experiment comparisons are differences in whether eq 1 is applied to no-modifier control samples, in sequence alignment tools, in error estimation, and in normalization procedures, as well as a lack of validation protocols.

Regardless of the particular method(s) applied, it seems evident that known LHP regions should be afforded some degree of specialized handling, distinct from the routine processes applied to either sequence alignment or variant calling in the remainder of the genome.

In order to identify potential functional motifs of MazF proteins, phylogentic analyses of MazF proteins were conducted by applying the embedded multiple sequence alignment ClustalW program in the Geneious software package v 5.5.7 [ 76, 77] with the Neighbor Joining method.

There have been wide range of computational algorithms applied to the sequence alignment challenge.

The sequence alignment appears in Figure S1.