We apply site-ligand interactions instead of target-ligand interactions and propose a chemical interpretable model to cover the site-ligand interactions.
We recommend applying site occupancy methods for monitoring presence of aquatic species.
In such a case, we can predict the ground motion at a target station from the waveforms of the adjacent station by applying site amplification correction.
It originates on the applied site and eventually spread.
We applied site recognition tools oPWM and SiteGA [ 19] to the Training set data.
The applied site was observed 24 and 48 hours after the application of FC or water.
For site i to be considered as eligible, the following rules were applied: Site i must be conserved along the branches leading to the orangutan, gorilla and chimp.
The resulting surface velocities were converted to depth-averaged velocities by applying site-specific, calibrated velocity indices.
To account for the fact that not all species were shared between sites we applied site-based corrections (= adjusted leaf-out date cf. Panchen et al. 2014).
To further investigate potential changes in selective pressure on specific residues, we applied site-specific models to our dataset (see Materials and Methods).
Therefore, we applied site-models of codon evolution to evaluate this scenario using each of the Epd groups (FishBrain, FishTj, MERPs and Basal) as separate data sets.
