After applying the ORA method to the same prostate cancer dataset, we identified 12 significant pathways under the same strict cut-off level (FDR < 0.01).
ORA approaches typically apply an arbitrary threshold value (e.g., fold change >2 or P < 0.05) on gene expression to assess whether the number of genes beyond threshold are significantly over- or underrepresented in the given pathway.
Porat's case was brought to a successful, if belated, conclusion thanks to the work of the grassroots Organization for the Resolution of Agunot, or ORA, which uses public demonstrations to apply pressure to recalcitrant husbands.
ORA is a non-invasive device that utilizes a rapid air impulse to apply force to the cornea.
The ORA is based on noncontact tonometer technology, which uses an air jet to apply force to the cornea and an electrooptical system to determine applanation [ 3].
The P-values and FC values for all peptides can be found in Additional file 3. We have previously applied pathway over-representation analysis (ORA) to kinome data to infer cellular responses from the standpoint of signaling networks [ 23, 24].
In addition, we applied the dataset to equal weight condition and traditional ORA because the equal weight condition maps genes to nodes, while traditional ORA focuses solely on gene number.
Compared with embedded BIST technique, configuration numbers can be reduced without exchanging the TPG, ORA for the CUT when the proposed BIST system is applied to test an FPGA.
A combination of the GeneTrail analysis methods, GSEA and ORA, together with other analysis tools, like the NIA array tool, was successfully applied for data mining.
We applied the algorithm to perform picking experiments on a δ18O time series generated from temperature and salinity data at depths of 5 m and 55 m using the ECMWF ORA-S4 ocean reanalysis dataset29 with data extracted from 26.7°N, 93.9°W (the location of our core-top and downcore samples) in the Gulf of Mexico.
