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We wrote simple C programs for creating 10-MB binary data files for every variant of our pseudorandom number generators and applied statistical tests to them, to assess their quality.
To evaluate the confidence level in the tree selection, we applied statistical tests with CONSEL [ 21].
The approach overcomes the limitation of commonly applied statistical tests that do not consider either CNV or gene size information.
Further, we compared characteristics of one final sample (N = 3,220) in terms of binary LOS (see table 2 also for applied statistical tests).
Last, we have only applied statistical tests of significance to our trend analyses, because we considered them in designing the study as a hypothetical way to test the hierarchical order of infections in our classification system.
To determine whether putative "red algal" and "cyanobacterial" genes in Phytophthora genomes provide support for the chromalveolate model, we applied statistical tests of these clear a priori expectations to comparative results against defined control groups.
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We applied statistical testing in 3-way contingency tables to predict TF interactions.
Indeed other studies have applied statistical testing to identify between 0.6 2.6% [ 15] or 1.7 19% [ 9] of genes to have significant differential abundance between amplified and unamplified populations.
The limma, genefilter, and gplots packages were used for the cluster analysis and to apply statistical tests to the normalised data in order to retrieve statistically significant differentially expressed genes [ 50- 52].
The mechanics of applying statistical tests therefore must address and resolve confounders.
Applying statistical tests to the results, an optimal procedure was developed that consisted of sample extraction by the solvent under mild shaking for 24 h and then removing the excessive solvent followed by drying the sample.
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