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Information on ASF transmission parameters could allow for more efficient application of outbreak control measures.
Wider application of outbreak detection software combined with targeted sequencing of bacterial genomes is needed to understand the contribution of interspecies gene transfer to resistance emergence.
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This raises concerns about the application of current outbreak guidelines for early warning/identification systems.
However, this characteristic can limit the application of MLST to outbreak identification (4 ).
An example simulation of a large outbreak of influenza is used to illustrate the application of the model for outbreak detection evaluation.
Existing typing schemes, such as spa, PFGE, PCR-ribotyping and MLST, have established a framework in the application of genetic data in outbreak investigation.
A Cochrane review of the application of tools for dengue outbreak prediction/detection and trend monitoring in surveillance systems highlighted the lack of evidence on the most feasible and sustainable surveillance approach (14).
Here, we examine the applications of new high-throughput sequencing approaches to the identification and characterization of outbreaks, focusing on the application of whole-genome sequencing (WGS) to outbreaks of bacterial infection.
In this review, we examine the applications of new high-throughput sequencing approaches to the identification and characterization of outbreaks, focusing on the application of whole-genome sequencing (WGS) to outbreaks of bacterial infection.
Successful control of epidemic plant disease may depend on prompt application of chemicals before the disease outbreak.
To establish the influence of factors determining respondents' application of preventive measures during the outbreak (dependent variable), we performed stepwise backward regression analyses.
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