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Moreover, CHOP induction results from oxidative stress, which accompanies ER stress and appears upstream of XBP1 and/or JNK.
However, the motif also appears upstream of proC (pyrroline-5-carboxylate reductase), as well as other genes further downstream of rhtB in ' Cand.
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Furthermore, an unsteady expansion wave may appear upstream of the secondary shock and the Mach number of the flow following the secondary shock is higher than that of the nozzle quasi-steady flow.
A closer inspection of Fig. 1a suggests that the stripe patterns appeared upstream of a pure GA-sequence whenever its upstream end began with a certain stretch of poly(A) (i.e. with many black pixels).
REGs appear upstream of the TATA box, and they exist in an orientation-insensitive manner.
Motif TGAATA appeared upstream of 16 RPGs and appeared upstream of only 85 genes in general, making it both the rarest motif and the motif with the greatest fold enrichment among RPG upstream regions (Table 1).
We identified nine significant motifs that each appeared upstream of between 16 and 81 of the RPGs (Table 1; Figure 1).
To test whether uORFs appear upstream of non-homologous genes, Arabidopsis uORF sequences were aligned to the entire Arabidopsis genome (version 5) [ 76] using tBLASTn (E-value = 10).
Motif 29 (Additional file 3: Table S5) appeared upstream of 14 genes, five of which encoded a putative sulfate transporter (Cthe_2531-2535) thappearedred to be co-expressed and potentially form an operon.
The flow field in such configuration is a result of the interaction between the multiple separation regions that appear upstream, above and downstream of the ribs.
We found the starting point (5') of NFRs appearing 350 450bp upstream of the TSS, and the end points (3') of NFRs primarily occurring 100bp downstream of the TSS.
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