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Motivation: Apart from databases and prediction tools, miRNA-related information is largely available as unstructured text.
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Apart from the database development, we also analyzed the VOC data using hierarchical clustering and network clustering based on DPClus [ 24, 25].
Moreover, apart from AAindex database, Chou's pseudo amino acid composition (PseAA) (Chou 2001) and its several variants, described in Nanni et al.
Apart from the database annotation of the assembled scaffolds these were also queried for intron length, intron distribution and gene density determination using AUGUSTUS v2.5.5 [ 68] with N. tabacum and S. lycopersicum as references.
This sets it apart from more comprehensive databases like Wormbase.
The Blastn program uses 'blastmsdb' database, which is a blast compatible and created apart from the main database by using 'formatdb' program of blast package.
Performance of the ANN model was compared with statistical analysis using datasets that were kept apart from the original database.
Apart from using the TFBS/promoter databases as references when performing promoter analyses the databases were also used as a source for investigating TFBS co-occurrences.
Secondly, apart from QISU (an injury surveillance database), the databases accessed for this study are administrative databases.
22 The study showed that more ADRs are more likely to be recorded in the HES database compared to the yellow card database (apart from ototoxic hearing loss and hemolytic anemia), which may reflect seriousness of ADR (for example warfarin-related bleeding).
In contrast, tools with the objective to predict the energy consumption in production and disposal are not available apart from the first material databases, such as Eco Materials Adviser in Autodesk.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com