Sentence examples for annotations we use from inspiring English sources

In avoid of missing important annotations, we use a parameter 25% instead of the top three rule.

To avoid arriving at misleading conclusions caused by biases in the annotations, we use the concept of informative cellular component.

To validate the 972 predicted annotations, we use the new unpublished full set of yeast's GI profiles from Boone Lab Boonee, 2014).

We also have made our code available on GitHub at https://github.com/MulletLab/RIG as an example and to provide the parameters and variant annotations we use.

To prevent our model from gaining an advantage over methods that used standard 3′-UTR annotations, we used RefSeq-annotated 3′ UTRs (rather than 3P-seq supported annotations) to generate the context++ test-set predictions.

Thus, to have a consistent set of CDS annotations, we used the RAST system to annotate both our in-house generated draft genomic sequences and the bacterial chromosomes of the 14 published S. aureus strains.

It is unclear whether this mutation is in the 3'UTR or outside the gene since the two annotations we used differed on exactly where exon 15 ends.

The AS annotations we used in this study were based on the annotations from AltSplice and Ecgene databases.

For functional annotations, we used Gene Ontology (1) downloaded on February 2013 and EcoCyc, version 16.5 (4).

To summarize GO functional annotations, we used the GOSlimViewer on the AgBase website.

To look for enrichment in gene ontology annotations, we used the publicly available bioinformatics tools at DAVID (http://david.abcc.ncifcrf.gov/).abcc.ncifcrf.gov/