Sentence examples for annotations taken from inspiring English sources

Thus, the dataset is split according to the TF superclass annotations taken from TRANSFAC®.

To facilitate identification of patterns among functional classes in a metabolic context, the transcriptomic and proteomic data were also plotted on a simplified metabolic reaction network using gene annotations taken from KEGG pathway database (Figure 5).

The promoter benchmark was based on the RefSeq gene annotations taken from the RefGene table of the hg18 genome assembly downloaded from the UCSC Genome Browser on October 22, 2009.

We combine this backbone with numerous variant-specific annotations taken from published datasets.

In this section we identified potential moonlighting proteins in the Escherichia coli K-12 genome by examining clusters of GO term annotations taken from UniProt.

Small structured non-coding genes were added using annotations taken from RFAM (Griffiths-Jones et al., 2003 ) and miRBase (Griffiths-Jones et al., 2006 ).

After this step, curators are able to annotate the available documents by adding, editing and removing concept and relation annotations, taking advantage of real-time collaboration features for faster and easier communication.

DILI annotations take into account the causality of hepatotoxicity, the incidence of the liver injury over population and the severity of the damage caused.

RCARE RNA editing site annotations took 7 seconds under 14.19 MBps network environments.

On a standard laptop (i7 chip), the analysis of the example data with default parameters and the WikiPathways annotations takes ∼1 min; analysis with GO annotation takes ∼25 min.

The test dataset (100 scaffolds, 289 genes and 6615 annotations) takes <5 min, whereas the four-species filarial nematode dataset (50 000 scaffolds, 50 000 genes and 700 000 annotations) takes <24 h, to recreate on a minimum specification machine.