Sentence examples for annotations one from inspiring English sources

Of course, the main problem plaguing all large-scale genome analysis projects is reliance on existing annotations: one may find himself studying idiosyncrasies of annotation software rather than biologically relevant features.

Even fewer systems allow users to search for similar models based on model annotations; one of those few, semanticSBML [ 9], goes further by providing facilities for clustering models on the basis of similarities in their annotations, and also for merging sets of models into more comprehensive ones.

For both annotations, one out of the upregulated conserved genes is annotated by the BP term gluconeogenesis, thus explaining why Salazar et al. identified it as an enriched BP term and FetGOat did not.

Provide them handouts with the following guidelines for preparing their annotations (one per student).

For example, using WU-BLAST to assign SCOP folds to proteomes, to reach a level of 1 error per 1000 annotations, one must use an E-value cutoff of 1×10−8 for Arabidopsis thaliana but only 1×10−2 for Caenorhabditis elegans.

Thus, to calculate with functional annotations, one would require a formal description of such biological processes.

For those C. albicans and zebrafish proteins that were selected based on functional annotations, one-way analysis of variance (ANOVA) was applied on the gene expression profiles in our time-course microarray data that correspond to these proteins to further select differentially expressed proteins.

We identified three HMGR transcripts based on KEGG annotation, one of which was more highly expressed in the main root body than in lateral roots, as observed by Kim et al. [ 47].

Annotation on one hand helps in predicting the functions and on the other hand provides confidence about assembly approach.

Because not every AMP structure had CATH or SCOP annotation, one could not determine all unique AMP structural folds simply based on these annotations.

For example, for hierarchical protein family classification [6] and functional annotation one may choose a larger or smaller set of representative proteomes depending on the phyletic distribution of the protein family members and sequence variation.