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First, the Overall distribution quantifies the amount of duplicate annotations in comparison to unique annotations or more concretely the comparison between counting a particular concept annotation every time it appears against counting it only once.
Next, using functions in the R package 'GOstats' (Falcon and Gentleman 2007), we investigated whether the mature microsatellite-containing genes were enriched for specific GO functional annotations (in comparison to the genes in the remainder of the genome).
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By searching iTRAQ MS/MS data generated from berry exocarp and mesocarp samples at ripening initiation, we determined that implementation of the custom database afforded a large improvement in high confidence peptide annotation in comparison to the MSDB.
Not surprisingly, simple parameter optimization already resulted in improved structure annotation accuracies in comparison to the results the tool authors had submitted to CASMI.
This confirms results in [53], where adaptive annotation automation in WebAnno can speed up the annotation process by a factor of 3 to 4 in comparison to a traditional annotation interface without suggestions.
As shown (Figure 3C), the variation of the ratios representing the same annotation unit was dramatically reduced in comparison to those of the same set of probe intensities for either wild type or mutant (Figure 3A).
The extent of virome annotation for cow rumen [ 59] and human lung [ 80] drops to as low as 13 15% in comparison to bacterial annotation (cow rumen: 32%) for similar environments.
Annotation-based metrics shown are computed in comparison to B. mori proteins.
In comparison to full annotation servers like RAST [ 22] the UFO server only covers a particular aspect of genome annotation.
Thus, there could be large difference in the way disease names are tagged in training and test corpus by our NERTri approach in comparison to manual annotation.
Alternatively, the functional information obtained by Blast2GO may have been biased in comparison to the available annotation for rice and Arabidopsis.
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