Annotations have been used for executive model object extension.
At present, 6,396 miRNA sequences and annotations have been deposited in the miRBase Sequence Database (release 11.0) [26 29].
Whilst a few notable data sets containing chemical named entity annotations have been developed, there was a lack of publicly available, wide-coverage, large-scale gold standard corpora of scientific publications.
Clinical side effect annotations have been used to predict effective combinations [13], and information from multiple domains have been integrated into a Probability Ensemble Approach to predict both efficacy and adverse effects of combinations with high predictive power [14].
The whole genome sequence of Lb.bulgaricus 2038 and its annotations have been deposited in GenBank under the accession number CP000156.
Functional annotations have been clustered based on the Log10 of enrichment p-values of different annotation terms across the different conditions.
In other organisms, high quality functional annotations have been assembled through automated and manual literature mining (e.g. the Saccharomyces Genome Database, http://www.yeastgenome.org).org
So far, ETA annotations have been shown to be functionally specific (positive predictive values above 90%) in enzymes and non-enzymes alike [57], but their functional resolution and coverage are limited.
With the exception of Drosophila melanogaster, this study provides the first instance where (i) mitochondrial genome annotations have been validated by transcribed sequence data, and (ii) predictions of processed mitochondrial transcripts (cistron) have been used for both structural and functional annotation of genes.
More than 2000 gene annotations have been improved.
To date, over 6000 legacy annotations have been converted from the GeneDB controlled vocabulary to FYPO terms, and a comparable number of new annotations have been curated.
