The editorial team agrees that resources must be committed to the developing and continuous support of public data repositories, while focusing not only in the challenges of storing the massive data files but also for more efficient annotation of the data involved.
KH initialized the project, computed the annotations for the sequence data and is the main author of the manuscript.
Unlike in the simulated data case, where the validity of each annotation was known by design, the consistency of C2 gene set annotations for the p53 data could only be inferred indirectly.
The open access fee for paper entitled: 'Small molecule annotation for the protein data bank.' will be paid by the Wellcome Trust Grant 088944.
To study the evolution of GC3 gradient along genes, we first divided each CDS alignment into three classes based on the rice gene annotation for the first data set, and on either rice, barley, or purple false brome (depending of the sampled species, see above) for the second one.
In the case of eagle-i, the requirements for data annotation evolved as the data were collected, the ontology updated, and the guidelines enhanced.
In the present study, we propose a procedure for metabolite annotation using the data obtained from FT-ICR/MS by taking classification of metabolite-derived ions into consideration.
We ran both C++ and Java pipelines on the BioC-formatted NCBI disease corpus, thereby enriching this resource with machine-assisted annotations and preprocessing the data ready for use by any BioC compliant application.
Such item semantic types are always clearly defined in available annotation data; furthermore, their correctness for the data integrated in the GPKB is carefully and thoroughly controlled by the GPKB data quality and consistency checking procedures used.
LS and AKP have contributed in the development and implementation of software tools for the data annotation and query engine in the web based interface, and incorporation of other existing standards.
HS has contributed in the development and implementation of software tools for the data annotation and query engine in the web based interface, and incorporation of other existing standards.
