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Similarly, in the mouse genome, genes with common GO annotations are found in clusters [ 28].
As shown, most of the proteins whose PTM annotations are found in the FT field have MOD_RES inside it.
Supporting references for pathway and functional annotations are found in the gene report pages (see 'Pathway data entry points and navigational capabilities' section).
At the corresponding position in the protein sequence (Lysine 5 in P08898), four different annotations are found in dbPTM: N6-methyllysine, N6, N6-dimethyllysine, N6,N6,N6-trimethyllysine and N6-acetyllysine.
Interestingly, GO annotations in the 'reproduction' category contribute 2% of the GO annotations for the genes conserved within all the three super-phyla but 7% of the GO annotations conserved between the "Lophotrochozoa and Deuterostome only" (none of these reproduction GO annotations are found in the group conserved in the "Lophotrochozoa and Ecdysozoa only").
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A full list of duplicated annotations is found in Additional file 1: Table S9.
A full description of the synteny-based annotations is found in our phylogenomics paper [ 13].
A full list of significant module GO annotations is found in Additional File 3.csv.
A comparison of the two annotations is found in see Additional file 1: Table S15.
The AIMed corpus contains annotation on proteins and protein-protein interactions (PPI) for 200 abstracts, which were selected from the documents for which curated annotations were found in the Database of Interacting Proteins (http://dip.doe-mbi.ucla.edu/dip/Main.cgi).ucla.edu/dip/Main.cgi
Details of genes in each of the three groups and their annotation are found in Additional files 4, 5 and 6.
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