The results were classified as "functional annotation clustering," "functional annotation chart" and "functional annotation table".
This paper examines these existing systems and also reports our recent development of ChemReader – a comparable tool that can be specifically tailored for chemical database annotation (Table 1).
Also, seven genes were blasted without annotation (Table S5).
A GO annotation table describing the discussed genes for circadian rhythm is presented in Table 1.
The identified proteins were categorized according to their GO annotation (Table 2).
Using the annotation table provided by TRANSFAC, PWM identifiers were mapped to 297 unique UniProt accession identifiers.
We directly superimposed PROSITE domain coordinates (v4.3 D. melanogaster annotation; Table S1; [8]) onto the D. simulans population genomic data.
TFs were selected among the genes represented on the HG-U95A microarray based on Gene Ontology annotation (Table S3).
Putative functional roles of the 6068 genes were analyzed by Gene Ontology (GO) annotation and compared to the Drosophila annotation (Table 3).
Using the Ingenuity Pathways Analysis® software, these proteins were grouped into six functional networks (according to the software annotation) (Table S1).
This list was subsequently reduced to 47 putative ear cycling genes after consolidation of redundant probes and thorough gene annotation (Table S3).
