Exact(11)
AIM has provided a foundation for standardised image annotation practices in the clinical, research and translational communities.
Data sharing, and the good annotation practices it depends on, must become part of the fabric of daily research for researchers and funders.
Current annotation practices need to improve in order to more accurately reflect a genome's biological potential.
This tool has been incorporated into current annotation practices at all wwPDB data centers.
Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players.
The 'not helpful' category included instances in which use of the term would not be consistent with SGD annotation practices and standards.
Similar(49)
In addition, this approach normalized variations in annotation practice of public databases as each molecular function term became always annotated beyond that to its biological process and cellular component; making the annotation more consistent and more robust.
This result reflects the inherent challenge of GO curation as well as slight differences in annotation practice among the MODs.
For scoring computational predictions, each prediction was examined in light of the published literature for the gene product and current SGD standard annotation practice.
GO annotation practice includes an evidence code, Trace-able Author Statement (TAS), that can be used for these types of annotations, so perhaps a new evidence code that indicates a TAS annotation derived from text mining could be developed for such cases.
Using transcriptome data to identify anomalies and refine gene structure annotations has long been part of Wormbase's regular annotation practice (51) and we plan to evaluate and adapt their methods in combination with resources such as YEASTRACT (52) and the Yeast Promoter Atlas (53) to improve gene models at SGD in the near future.
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