Sentence examples for annotation method for from inspiring English sources

This suggests that ribosomal profiling may be a powerful gene annotation method for taxa less well studied than S. cerevisiae.

Table 1 summarizes gene counts obtained for each assembly followed by each gene annotation method, for the simulated V. vulnificus CMCP6 genomes.

Figure  3 shows a toy example of Ensemble-1 and 2. For clarity, in the next sections we use the name annotation method for both pipelines and variants of the ensemble algorithm.

For example, 902 reactions were identified as present by either all four EC annotation methods and/or the highest level of confidence of the PhylomeDB method for the GO annotation ('AcypiCyc Filtered by Cycads'), while 1622 by at least one single annotation method for EC or GO ('AcypiCyc All by CycADS').

Guo F, Ju F, Cai L, Zhang T. Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment.

Thus caution must be undertaken when depending on automated genome annotation methods for in silico characterization of multi-component systems, such as the T4SS.

By contrast, many annotation methods, for instance the nearest-neighbor and BLAST approaches we benchmark against, do not make use of this information.

JKC oversaw all genomics aspects of the analysis, identified appropriate annotation methods for pathway and completeness analysis as well as performing initial expression analysis, submitted microarray data, and contributing substantially to the manuscript.

Efficient and effective annotation methods for non-model organisms has become critical in a time when initiatives such as i5K (5000 insect genomes [ 52]) and G10K (10,000 animal genomes [ 53]) motivate scientists to investigate genomes of diverse organisms, many of which will be evolutionarily distant from existing model organisms.

These data allowed us to perform correlation analysis between piRNA abundance and TE copy number across a larger number of strains, to perform all of our de novo piRNA analyses using the same TE annotation methods for all the strains and to use D. melanogaster strains with similar genetic backgrounds.

Where relevant, genomes were re-annotated using the same annotation method described for B. longum subsp. longum NCIMB 8809 and B. longum subsp. longum CCUG 30698.