Sentence examples for annotation measures from inspiring English sources

Within this report, we observe that the MeSHOP comparisons perform better than simple annotation measures, which indicates that the similarity assessment has value.

Three measures were computed: (i) alignment conservation annotation measures the number of conserved physicochemical properties for each column of the alignment applying the approach used in the AMAS method [ 27]; (ii) alignment quality annotation is a measure of the likelihood of observing mutations (if any) in a particular column of the alignment.

The annotations measured the meaning transfer rates using human evaluations and a scale defined here called the concept matching score.

We summarize important aspects of the structure of the ontology, describe sources and types of functional annotations, survey measures of GO annotation similarity, review typical uses of GO and discuss other important considerations pertaining to the use of GO in bioinformatics applications.

We propose a novel general-purpose annotation similarity measure called 'AnnSim' that measures the relatedness between two entities based on the similarity of their annotations.

Conventional annotation methods measuring the over-representation of functional categories, such as the performed KEGG-pathway mapping may lack an adequate representation of expression data in the functional specific cellular context.

Section 'Annotation similarity measure for annotation graphs' presents our approach.

To assess the performance of peak annotations, three measures were used, precision, recall and their harmonic mean, the F1 score.

> -wrap-foot> We have proposed an annotation similarity measure called AnnSim to determine the relatedness of two entities based on the similarity of their sets of annotations.

Furthermore, domain-specific annotation-based measures rely on knowledge encoded in specific taxonomies or ontologies to compute the similarity of two entities.

> To evaluate the consistency of the corpus annotations, we measure inter-annotator agreement (IAA) over the articles annotated by both annotators.