After that, the Illumina annotation information based on the Genome build 36.2 was used to select a subset of SNPs, belonging to the top 40 AD candidate genes (Bertram et al., 2007).
After that, the Illumina annotation information based on the Genome build 36.2 was used to select a subset of SNPs, belonging or proximal to the top 40 AD candidate genes.
While traditional wikis contain only texts that computers can neither understand nor evaluate, semantic wikis add semantic annotations that organize information based on structure that can be understood by computers.
> -wrap-foot> Each UniProtKB entry combines information from a wide range of sources including sequence data imported from DDBJ/ENA/GenBank, Ensembl and PDBe records, annotation imported from other databases, automatic annotation predictions and manually curated information based on experimental data from literature and results from sequence analysis programs.
Although the metabolic network composition at this stage was consistent with available information based on genome annotation and experimental observations [ 4, 5, 20, 24, 26, 42], the resulting flux space remained highly underdetermined.
To complete the expanded annotation, we calculated additional probe location information based on the Illumina-provided MAPINFO GenomeStudio column (location of the C in the target CpG): 1) the interval of the target CpG (CpG), 2) the interval containing the probe but excluding the target CpG (Probew/o CpG) and 3) the interval of the entire probe (entire probe) (Additional files 1 and 14).
Gene annotation is the assignment of gene level information based on the probeset sequences, such as the name and symbol of the gene being interrogated and its general function.
Repeat information based on the RepeatMasker annotations (repeat name, start and end positions on the chromosome and orientation) was extracted from the UCSC genome annotation database.
Of the 14,035 homologous genes, 13,784 genes have chromosome information based on current zebrafish genome annotation in ENSEMBL (Table 2).
It should be stressed that, for English, pos-tagging information based on Tree-Tagger4 were used and for other languages the information was based on the annotations of FreeLing.5.
