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We checked the studied ITS2 sequences of plants and animals using the Hidden Markov model (HMM) for fungal ITS2 annotation, in addition to conducting BLAST searches of the fungal nrITS database [36].
GenDBE allows the manual curation of gene specific annotation in addition to the visualisation of gene order.
Global transcriptome analysis is important to better understand gene expression, genetic variation, and gene structure annotation in addition to other important features.
The complementary nature of this comparative analysis provided confidence for the identification of non-exonic peptides located outside the GENCODE V7 annotation, in addition to identifying 15% more spectra than would have been identified solely from a protein database search.
At minimum, 450 k users should carefully check candidate probes against the target CpG SNP annotation in addition to a current SNP database, as more polymorphisms are likely to be identified and validated in coming years.
The harvEST:Barley (version 1.35; http://harvest.ucr.edu/), Munich Information Center for Protein Sequence [ 71] and Universal Protein Resource [ 72], were used to conduct gene functional annotation in addition to manual editing.
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Finally, we have three sub-ontology feature scores derived as described above from co-annotation in addition to the 36 KW features.
This results in a significant increase in functional annotations, in addition to having GO terms for functional enrichment testing.
'NOT' annotations are inherited by descendants just like other GO annotations, in addition to preventing the inheritance of the corresponding positive annotation.
The average number of annotations in addition to the minimum and maximum number of annotations are also available in Table 1.
Ultimately, allowing users to append their own annotations (in addition to those endorsed by publishers) should help to involve authors in the manuscript mark-up process.
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