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Additional file 1: Annotated translation of the virophage-related contigs from metagenomes.
It is an annotated translation of the Han Dynasty "Chronicle on the Western Regions" with accompanying notes, and what notes they are!
It seems likely that Rimbaud inherited his gifts and intellectual ambition from his father, who, while serving in North Africa, had produced an annotated translation of the Koran and a collection of Arab jokes.
In his annotated translation of the Bhagavad Gita, readers could learn how to be pleasing to Lord Krishna by eschewing meat and spicy food (which could "cause misery by producing mucus in the stomach"), by working hard, by chanting his name — small, tangible steps that could bring a devotee close to the divine.
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2. This treatise was published in English translations in 1736 and 1737, the latter under the title, "A Treatise of the Method of Fluxions and Infinite Series, With its Application to the Geometry of Curve Lines" (reprinted in [W, I, 27-137]; see also [M, III, 32-372] for a fully annotated version of the Latin text with translation).
This background was a set of 10529 sequences of 300 bp upstream of every annotated translation start codon in the genome (translation start codons were used rather than putative transcription start sites as 5′ UTRs are not well annotated in the genome).
This peptide overlaps the region upstream to the currently annotated translation start site and the first three amino acids based on the annotated translation start site.
To define the length of 5′ UTRs, the distance from each defined transcription start site to the nearest downstream annotated translation start codon (up to a maximum of 500 bp away) was plotted.
In several cases the ORF downstream of yrbEA was either not annotated or annotated in the reverse direction; however, translation of the genomic sequence revealed a YrbEB homolog encoded in the expected direction (Table 3).
A whole transcriptome RNA-seq library as well as an RNA-seq library enriched for primary 5′-ends were used for the detection of transcription start sites, to correct tRNA predictions, to identify novel transcripts like small RNAs and to improve the annotation through the correction of falsely annotated translation start sites.
In his introduction to "The Landmark Thucydides," an amply annotated reprint of a Victorian translation of the History, he sneers at the "veneer of culture" that war inevitably strips away, showing us up "for what we really are".
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com