Exact(57)
Since this is an approach that attempts to integrate annotations obtained from more than one search method, we chose to examine only those annotations that are reported at high confidence through the multitude of methods employed here and therefore report only 614 of the domain family annotations that could be annotated through any one of the approaches.
The KIM D27 genome was annotated through JCVI's auto-annotation pipeline.
Finally, the above predictions and annotations were reconciled with the genes predicted and annotated through the Integrated Microbial Genomes Expert Review (IMG-ER) pipeline [ 124].
The assembled sequence was annotated through IonGap Annotation Service (http://iongap.hpc.iter.es/), an integrated Genome Analysis Platform for Ion Torrent sequence data.
Target genes were functionally annotated through the application of Ingenuity Pathways Analysis (Ingenuity® Systems, www.ingenuity.com).com
The vast majority of proteins have been annotated through predictive methods which work by comparing protein sequences and determining their degree of similarity.
In phase 4, positive probes are identified on the basis of signal intensity of each probe on the test array, and the target sequences of all positive probes are annotated through bioinformatic data mining.
The number of protein sequences that can be annotated through comparison to PFAM, TIGRfam or COG was approximately 2.5% prior to removal of rRNA sequences and 4.3% following removal.
Similar(3)
With regard to gene annotation, the genome has been re-annotated through our gene prediction pipeline, which integrates EST, RNA-seq, protein and gene prediction evidences.
Additionally, 96 proteins were manually (re- annotated thre- annotatedure curathrough
The contigs of Sii ATCC BAA-102T were re-annotated through the RAST pipeline to facilitate highest comparability with the genome of CJ18 annotated also via the RAST pipeline [ 84].
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