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The human annotator annotated the same sentences and we compared the results.
If both annotators had annotated the same entity, the largest span is preferred in most cases.
Reads that had a UFT mapping within 100 bp of an annotated TE for which RepeatMasker annotated the same TE family in the TE portion of the read were identified as supporting the presence of the annotated TE in that strain.
The second annotator followed these guidelines and annotated the same corpus.
They are also used to generate the corresponding profile-based cluster HMM for modelling all sequences that belong to the cluster, including the pig one, from where they acquire annotation (the UniProtKB file F1S737 annotated the same protein as uncharacterized).
By gradually relaxing (increasing) the cutoff, we found that conflict of annotation occurred at an E-value of 1e-1 (two different Rfam families annotated the same locus).
Similar(47)
When comparing the annotation of entities between the two annotators, there is agreement if each annotator annotates the same entity: i.e., both the textual span (begin/end boundaries) of the annotated entity and the entity type match.
This property was evaluated through an inter-annotator agreement, which was done by recruiting a group of annotators to annotate the same set of documents according to the spatiotemporal scheme.
We have developed two measures of GO term functional similarity, one (the annotation probabilities) measures whether two GO terms are found annotating the same protein more often than expected by chance.
In our case, we want to estimate the agreement between humans when annotating the same tweets for stance.
Because CrowdFlower continues to recruit workers until the task is complete, there is no guarantee that all workers will annotate the same set of units.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com