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Moreover, a single sequence may be associated with multiple GO annotations within a single category, giving rise to more GO-annotations than sequences annotated (Table 3).
A total of 48,300 (66.3%) unique sequences with a significant match were annotated (Table 2).> -wrap-foot> The annotations were obtained by comparing the assembled sequences with sequences from KEGG, Nr, and UniProt of public databases.
However, in T. p. pertenue strains, gene TP0132 was not annotated (Table 3).
A total of 2,589 open reading frames was identified and annotated (Table S1).
110 encoded proteins with unknown function and 1 was not annotated (Table S1).
We compute the FP3mem score for a group of human, nematode (Caenorhabditis elegans), and yeast (Sacharomyces cerevisiae) transmembrane proteins that have been experimentally annotated (Table 3).
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The updated annotated tables list a wide selection of mouse mutants with hair growth abnormalities, classified into four categories: Mutations that affect hair follicle (1) morphogenesis, (2) cycling, (3) structure, and (4) mutations that induce extrafollicular events (for example immune system defects) resulting in secondary hair growth abnormalities.
Out of 108 JH upregulated ESTs, 74 could be annotated by BLASTx against the nr database through BLAST2GO, and 332 out of 399 downregulated ESTs could be annotated (Tables 2 and 3, Additional file 1: Table S1A, S1B).
The gene names, functional categories, and putative origin of each transcript are annotated in Table S6, Table S7, Table S8, and Table S9.
The repaired cd00300 dataset has 13 sequences removed because of alignment issues (annotated in Table S2).
These seven large regions of difference (RDs) are annotated in Table 1.
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