When a sequence has been annotated, its status will change to 'annotated' and the annotation can be accessed through the View icon.
Unsupervised clustering of RNA-seq data from human primary prostate cancer annotated for status of SPOP mutation, CHD1 deletion, and MAP3K7 deletion, performed on the BRCA-1 knockdown gene signature (M2748).
To improve utility of these data in preparation for ASGARD deposition, the O. fasciatus and P. hawaiensis transcriptomes were further annotated to match the annotation status of the G. bimaculatus transcriptome (V.
Based on the annotation status and the presence of corresponding cDNA clones, genes were classified into 23K annotated expressed (AE) genes, 33K annotated non-expressed (ANE) genes, and 5.5K non-annotated expressed (NAE) genes.
Each observation was manually annotated with smoking status.
All original GIs were annotated with their status as retrieved from id1_fetch.
We obtained 188 illicit drugs according to the "illicit" status annotated by DrugBank.
Patients in the data set were annotated with HER2 status and 72% of them were HER2-negative.
Here, accuracy measures the proportion of genes with correctly annotated copy number status: neutral, gain or loss.
These analyses show consistency across data sets in the expression of ER and HER2 across samples clinically annotated with ER-status, as well as in what would be expected for the PAM50 gene expression subtypes.
