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For this we have performed 7 experiments using the Capsicum annuum (bell or sweet pepper) dataset containing 50 empirical and 10,500 synthetic images with 7 pixel-level annotated part classes.
The protein database Swiss-Prot, a manually annotated part of UniProt KB [ 15], was used to select protein, gene and organism names.
Gene function was annotated using BLASTx (E value < 10−5) queries in the following databases: nr (non-redundant protein sequences, http://www.ncbi.nlm.nih.gov), Pfam (annotated Protein family), and Swiss-Prot (the manually annotated part of the UniProt protein sequence database, http://www.expasy.ch/sprot).
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The alternative to the separate way of annotating parts in enumerations would have been an annotation including the connecting word (in that example 'or').
Users can also annotate parts of a webshot with comments, which is pretty neat.
Sequences that are parts of repetitive elements or annotated function RNAs were excluded.
The genes attB and attD are implicated in bacteria-plant signalling during root colonisation and at the wound site during pathogenesis, with attB part of aproNOG06835 annotated as part of a binding-protein-dependent transport system, which is predicted to transport mannopine in C58 [ 50].
Below the MS/MS spectra, the alignment between the Sanger (top) and TIGR (below) annotation is shown, indicating that the identified sequence was only annotated as part of the Aspartate transaminase gene in the TIGR dataset (underlined).
Pfam was used to identify functional domain region lengths, and linker regions were protein regions not annotated as part of a functional domain.
This exemplifies a larger theme which stipulates that an intron could function as a separate entity even if it is currently annotated as part of a larger RNA species.
And there's plenty of reading to do with texts by Chris Kraus and Tan Lin, and with Peter Fend's minutely annotated collages, part of an immense project of news clips and e-mails detailing the effects of corporate power on ecology.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com