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For transcripts found to be differentially expressed (see below) that were not annotated in this way, additional annotation was performed using Blast (<10−15) against the NCBI Reference Sequence (RefSeq), nr and nt databases.
A further 119 Census proteins can be structurally annotated in this way (Fig. 3a); of these 119 proteins, 69 have 50 89% homology to the nearest determined structure, which makes them suitable candidates for potentially useful homology modelling.
For this analysis, the number of sequences with significant identity to each metabolic gene in a functional category in the SEED subsystem database were normalised to the sequencing effort for each sample (Fig. 1) and sequences which could not be annotated in this way were not included.
Proteins annotated in this way were termed "KOG-TWOG-LSE".
Approximately 29% (77,591/263,425) of the cowpea GSRs could be annotated in this way.
However, we would urge caution in accepting the orthology match of probes annotated in this way without further verification.
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Given that Evernote is designed for list-making, I can see people people annotating in this way quite easily.
As a consequence, the human effort required to carefully annotate in this way the 10 training substacks (0.11% of a whole cerebellum image, 1770 cells in total) was modest (∼3 h of work).
The Rich factor is the ratio of DEGs numbers annotated in this pathway term to all gene numbers annotated in this pathway term.
Fifty of the seventy ORFs could not be annotated in any way based on amino acid identities with sequences already present in the databases.
An early proposal to create servers that would annotate documents in this way was put forward by Murray-Rust and West during the 1990s [21] under the name of virtual hyperglossary.
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explained in this way
edited in this way
characterized in this way
recorded in this way
entered in this way
characterised in this way
defined in this way
stated in this way
annotated in this manner
wrote in this way
annotated in this work
annotated in this region
annotated in this pathway
annotated in this dataset
annotated in this contig
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com