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All data on the functionally characterized genes annotated in this study were compiled in OGRO (http://qtaro.abr.affrc.go.jp/ogro).jp/ogro
Flower developmental stages annotated in this study were described by Smyth et al [ 40].
A total of 601 GO terms of the target genes annotated in this study.
In total, 144 zebra finch chicken orthologs were annotated in this study.
Includes the ID for all the NBS-LRR genes annotated in this study with additional information.
A total of 53 most enriched pathways of target gene annotated in this study.
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The A. oryzae mitochondrial genome [ 16] was re-annotated in this study to include protein coding genes.
For this reason, probes were re-annotated in this study using alternative CDFs [ 32] for Affymetrix and a validated composite look-up list for Illumina [ 35].
For example, of the 69 antigens which were re-annotated in this study, proteins Rv1461 and Rv1462, originally marked as hypothetical proteins, were found (both by domain analysis and literature search) to be part of the SUF machinery (mycobacterial system of [Fe-S] cluster assembly) identified by Huet and coworkers [ 145, 146].
Additional file 1: Table S1 provides full names for all annotated genes in this study.
Of the annotated genes in this study, 14 genes (Supplementary Table S7) were classified into the TLR signaling pathway through BLAST search against the KEGG database.
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characterized in this study
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