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The GO interaction graph was constructed connecting each GO term to all gene products annotated in that term (GO annotation as available from the GO gene-association file).
Seventeen prl loci were not annotated in that spreadsheet (prl7, prl9, prl11, prl15, prl17, prl18, prl22, prl25, prl27, prl29, prl30, prl49, prl56, prl61, prl63, prl64, plr67).
From the GO category of biological process, cellular process was the most dominant term, accounting for 87.8% of sequences annotated in that category, followed by metabolic process (65.3%).
We mapped the proximal breakpoint within the gene lodestar (lds) that had been tentatively annotated in that region of BAC 40C11 (see Figure 1 right and Materials and Methods).
The pathway node contains the information on the number of input sequences annotated in that pathway.
#% DE: Percentage of genes annotated in that pathway that were observed differentially expressed in the present study.
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Importantly, this test does not require that sites are co-bound, but instead only considers whether the set of potential gene products are annotated in ways that cannot be explained by chance alone.
In theory, the data annotated in databases that are not maintained anymore could still be of use with the support of a public bug tracker, where known errors that cannot be fixed because of lack of maintenance can still be reported.
More importantly, iELM incorporates the less well-known SLiM classes (over two-thirds of those annotated in ELM) that do not have this overlapping intra-domain specificity enabling a more extensive array of SLiM-mediated interfaces to be predicted for the human interactome.
For tRNA Ser AGY, the sequences used were as those annotated in GenBank for that genome.
A total of 114 unigenes were annotated in 16 enzymes that are involved in shikimic acid or aromatic amino acid pathway.
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CEO of Professional Science Editing for Scientists @ prosciediting.com