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These sentences describe experimental results and can be used to make a complete GO annotation (i.e. the entity being annotated, GO term and GO evidence code).
The annotated GO DAG is then written into a tabulator delimited file which contains the GO terms in the first column and all annotated genes in the corresponding rows.
With a PON, we are able to predict the function of a protein by statistically analyzing manually annotated GO terms for each neighboring protein.
However, the effective use of GO terms in solving sequence-based prediction problems remains challenging, especially when query protein sequences have no accession number or annotated GO term.
The first was a compilation of RefSeq and Uniprot proteins electronically annotated (GO evidence code "IEA") with identical GO terms as in our training and test set.
Further improvement was achieved by statistical analysis of manually annotated GO terms for each neighboring protein.
For the micro-reading benchmark, the gold standard contained on average 2.8 annotated GO terms per abstract.
In this report, we used well annotated GO information of Drosophila melanogaster to interpret the gene function of our ESTs.
For each sequence, the specifically annotated GO terms provide a broad overview of the groups of genes cataloged in the transcriptome.
Connecting map positions to GO terms requires synchronizing several information sources, including livestock maps, human sequence annotated GO terms, and GO databases.
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Finding commonly co-annotated GO terms.
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