Sentence examples for annotated down from inspiring English sources
Microarrays identified 311 annotated down regulated genes (P < 0.05, FC > 1.5), of which 75%% were validated by RNA-seq (Additional file 11: Table S11).
Dressed in a well-worn dark turtleneck, white sneakers and yanked-up white socks, Mr. Holzman eagerly showed off the documentary details of the app, including exhaustive visual inventories of the band's recording equipment and a Doors-era map of Hollywood annotated down to Morrison's favorite liquor store.
Of the top 10 annotated down-regulated genes in SL1344 infected at 4 days (Table 1), 80% genes were involved in the regulation of cell cycle, cellular growth and proliferation and metabolism process, but SSTR1 was also involved in inflammatory response.
Of the top 10 annotated down-regulated genes in SL1344 infected group at 8 hours, we found most of the genes were relative to the cell cycle and cell death process: TP53INP1, SGK1, SSTR1 and EMX2 were involved in cell cycle; TP53INP1, TGFBI, SGK1 and PLK3 were involved in cell death.
In the case of cytoskeleton, all 19 genes annotated were down-regulated (see Additional File 1).
We then examined all replicated representations from the same source as annotated to reduce down to 57 ovarian cancer cell lines or 205 patient samples (from each source) by taking the median protein expression level of all replicates.
We used default GOA slim file (a list of general GO terms) for annotating the down-regulated mRNAs.
Of the 170 transcripts highlighted, 89 annotated transcripts were up-regulated by SD, while 24 annotated transcripts were down-regulated by SD.
89 annotated transcripts were up-regulated by short days, while 24 annotated transcripts were down-regulated by short days.
A number of genes annotated as auxin down-regulated were also found to peak in expression at this stage.
However, four of the five top annotated up-regulated DE genes and all top five annotated down-regulated DE genes were the same in W15m vs. Wet and W15m vs. Dry comparisons.
