All methylated genes were annotated based on GO annotation.
The DETs were annotated based on NetAffx annotation data for cotton GeneChip (http://www.affymetrix.com).
A total of 60,127 unigenes were functionally annotated based on the sequence similarity.
The sequences were functionally annotated based upon MG-RAST plataform using the SEED database.
Information is annotated based on the order of the atoms in the SMILES string.
As of 31 March 2012, 702 functionally characterized genes were annotated based on the information from 707 articles.
These genes are functionally annotated based on GO information.
Finally, functional pathways were annotated based on KEGG pathway analyses.
Often gene functions of chicken genes were annotated based on sequence conservation without further functional evidence.
Figure 4 illustrates genes which were annotated based on domain, motif, family and fold searches.
Genes in all tables were categorized and annotated based on functional information obtained in online databases and/or previous studies.
