Exact(1)
*) All transcripts, except those with annotated internal stop codons, annotated as missing ends or transcripts that are not multiples of three in length.
Similar(7)
For multivariate analysis all missing values were annotated as 0 and in univariate analysis annotated as 'NaN'.
All sequences were annotated as above.
Thirty-four essential genes in B. fragilis 638R (and annotated as hypothetical only) were missing from the other two B. fragilis strains, indicating that while the majority of the essential networks of B. fragilis 638R are likely conserved among the species but there are still differences between strains.
We hypothesize that more ECM and biomineralization genes are involved in both forms of calcification but because they are not yet annotated as such they were missed in our analysis.
Others are due to: Prodigal annotation errors, e.g. split gene models; genes annotated as pseudogenes in MG1655; genes missed by the syntenic gene pairs assignment algorithm.
SNPs fulfilling the following criteria were excluded from downstream analyses: monoallelic SNPs (minor allele frequency = 0), SNPs with more than 5% data missing, annotated as triallelic, or having probes cross-matching with the nuclear genome.
From the previously annotated gene cluster for galactose-rich EPS [ 37, 44], our analysis only missed welJ, annotated as alpha-1,3-galactosyltransferase (LGG_02048), as this gene was not predicted as a GT in our analysis.
Related(1)
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