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Animal cluster analyses were done using MultiExperiment Viewer.
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Two isolates originating from the same animal clustered in two different clusters.
In one animal, several clusters were observed in every section examined from different regions of both testes; in the second animal, clusters were less frequent but distributed in different parts of the testis.
One 15-day control animal clustered away from other samples in the same treatment group and thus appeared to be an outlier.
In nature, he began to argue, herds of migratory animals cluster in small areas, feeding for a day or two before, driven off by predators, they move to a new spot.
Other clusters of E. coli were associated with PID in 7/7 (cluster 2, RAPD B1-1), 4/7 (cluster 3, RAPD A4) and 7/7 animals (cluster 4, RAPD B1-4).
A cluster of E. coli was identified by MLST that was only isolated from unaffected animals (cluster 1) and three clusters of bacteria were associated with PID (clusters 2 to 4).
However, those from intermediate animals cluster with both the obese and lean groups.
The heatmap of the top 100 DE genes (Fig. 2) shows that mostly those from the lean and obese animals cluster together within each group.
MDS analysis shows that young animals cluster together, while old individuals have a clear high degree of variance between each biological replicate.
The jackknifed β diversity and hierarchical-clustering analysis via unweighted pair group method with arithmetic mean (UPGMA) demonstrate that all wild-type and knockout animals cluster in their own groups.
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